Whole slide pathology images from excision specimens of cutaneous basal cell carcinomas (BCC) collected at the Department of Pathology at Sahlgrenska University Hospital, Sweden. The data set contains 1832 WSIs from 479 BCCs annotated on a slide level.
Keywords: Pathology, Whole slide imaging, Weakly annotated, Basal cell carcinoma, Skin cancer.
Sample images with reduced image quality. Please click to preview.
|Cite as||Noora Neittaanmäki, Kajsa Villiamsson, Jan Siarov, Filmon Yacob, Juulia T Suvilehto, Lisa Sjöblom, and Magnus Kjellberg (2023) Basal cell carcinoma classification doi:10.23698/aida/bccc|
|Title||Basal cell carcinoma classification|
Juulia T Suvilehto
NanoZoomer S360 Hamamatsu
|Stain||H&E (hematoxylin and eosin)|
|Copyright||Copyright 2023 University of Gothenburg, Noora Neittaanmäki|
Available under the following licenses, described in the License section below.
AIDA BY license
The data is annotated on a slide level into four aggressivity tumour subtypes: low aggressive Ia (nodular) and Ib (superficial) and more aggressive subtypes II (medium aggressive) and III (high aggressive). Of these, types Ia and Ib represent low risk and II and III high risk tumors according to WHO classilification of skin tumors (4th Edition 2018).
The dataset consists of two types of images: Histopathological slides are stored as .ndpi (size per slide 1-5.5GB). Annotations are provided as .csv files (one for main data set, one for test set)
Free for use in legal and ethical medical diagnostics research. Please contact the dataset provider for terms of access.
You are invited to send an access request email from your institutional account.
Clicking the access request email link above should open a draft email message in a new window, to help you provide relevant information for efficient request evaluation. If the above link does not work for you, then please click to view the suggested email text.
Subject: Requesting access to dataset doi:10.23698/aida/bccc
I work at INSTITUTION in COUNTRY, emailing from my institutional account.
I would like to access the dataset doi:10.23698/aida/bccc, for use in ethical and legal medical diagnostics research. Could you please send me a data sharing agreement template?
Our planned use of the data can be summarized as:
We are aware that publications resulting from the use of this data must include indicated authors of this dataset in the author list.
Example agreement template: https://datahub.aida.scilifelab.se/sharing/templates/
Name of research PI ("Recipient Scientist"): PI_NAME (cc here)
Title of research PI: PI_TITLE (ph d or better, in relevant field)
Name of institution: INSTITUTION_NAME
Name of department: DEPARTMENT_NAME
Institution postal address: POSTAL_ADDRESS
Name of authorized signatory: SIGNATORY_NAME (cc here)
Title of authorized signatory: SIGNATORY_TITLE
Also, I would like to ALTERNATIVELY_WOULD_NOT_LIKE_TO be included in the public record of data sharing facilitated by AIDA:
which is used to facilitate scientific discussion, and to show what good AIDA has been to the global research community.
(If "not", then only institution/department information will be included.)
Click to create draft email (new window). Use your institutional account.
AIDA BY license
Copyright 2023 University of Gothenburg, Noora Neittaanmäki
Permission to use, copy, modify, and/or distribute the data within AIDA (Analytic Imaging Diagnostics Arena https://medtech4health.se/aida) for the purpose of research or education with or without fee is hereby granted, provided that the above copyright notice and this permission notice appear in all copies, and that publications resulting from the use of this data cite the following works:
Noora Neittaanmäki, Kajsa Villiamsson, Jan Siarov, Filmon Yacob, Juulia T Suvilehto, Lisa Sjöblom, and Magnus Kjellberg (2023) Basal cell carcinoma classification doi:10.23698/aida/bccc
Paper 1, in press
THE DATA IS PROVIDED “AS IS” AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS DATA INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR CHARACTERISTICS OF THIS DATA.