Whole slide imaging of 102 primary diagnosed breast cancers. In this dataset one representative image from the preoperative biopsy have been manually selected and matched with one image representative from the surgically removed invasive tumour. Both biopsy and whole section are presented as one case and contain 2 HE stained slides per case. The section from the surgical resection is from one piece as default, biopsies may vary from 1-3 per slide. Breastcancer cases were consecutively selected from the laboratory information system based on diagnosis including only Invasive breast cancer (NST) and Invasive lobular carcinoma (ILC). Each slide has been evaluated in clinic by at least one senior consultant in breast pathology and controlled before extraction to this dataset by an additional independent senior breast pathologist. No neoadjuvant cases included. No male breast cancers included. The cases are anonymised and exported from the digital archive at the Department of Clinical Pathology in Linköping, Region Östergötland.

Keywords: Breast cancer, Pathology, Whole slide imaging.

Sample images

Sample images with reduced image quality. Please click to preview.

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Dataset information

Short name	BRMBR
Origin	Clinical
Cite as	Anna Bodén (2023) Breast data from preoperative and surgical cases doi:10.23698/aida/brmbr [BibTeX format] @misc{ bodén_2023_brmbr, author = { Anna Bodén }, title = { Breast data from preoperative and surgical cases }, year = 2023, publisher = { AIDA }, doi = { 10.23698/aida/brmbr }, howpublished = { Available: AIDA Data Hub }, url = { https://datahub.aida.scilifelab.se/10.23698/aida/brmbr } }
Field	Pathology
Organ	Breast
Age span
Title	Breast data from preoperative and surgical cases
Author	Anna Bodén
Year	2023
DOI	doi:10.23698/aida/brmbr
Status	Ongoing
Version	1.0.1
Scans	102
Annotations	0
Size	120.26GB
Resolution	x40 (one large section x20 is included)
Modality	SM
Scanner	Hamamatsu NanoZoomer XR Hamamatsu NanoZoomer S360 Hamamatsu NanoZoomer S60
Stain	H&E (hematoxylin and eosin)
Phase
References
Copyright	Copyright 2023 Linköping University, Claes Lundström
Access	Available under the following licenses, described in the License section below. Controlled access Free for use in legal and ethical medical diagnostics research. AIDA BY license Free for use within AIDA with attribution.

Annotation

No in-image annotations available.

License

Controlled access

Free for use in legal and ethical medical diagnostics research. Please contact the dataset provider for terms of access.

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To: claes.lundstrom@liu.se
cc: Anna.C.Boden@regionostergotland.se,aida-data@nbis.se
Subject: Requesting access to dataset doi:10.23698/aida/brmbr
Hi!

I work at INSTITUTION in COUNTRY, emailing from my institutional account.

I would like to access the dataset doi:10.23698/aida/brmbr, for use in ethical and legal medical diagnostics research. Could you please send me a data sharing agreement template?

Our planned use of the data can be summarized as:

BRIEF_DESCRIPTION_OF_PLANNED_ACTIVITIES

Dataset: https://datahub.aida.scilifelab.se/10.23698/aida/brmbr

Example agreement template: https://datahub.aida.scilifelab.se/sharing/templates/

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AIDA BY license

Copyright 2023 Linköping University, Claes Lundström

Permission to use, copy, modify, and/or distribute this data within Analytic Imaging Diagnostics Arena (AIDA) for the purpose of medical diagnostics research with or without fee is hereby granted, provided that the above copyright notice and this permission notice appear in all copies, and that publications resulting from the use of this data cite the following works:

Anna Bodén (2023) Breast data from preoperative and surgical cases doi:10.23698/aida/brmbr.

THE DATA IS PROVIDED “AS IS” AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS DATA INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR CHARACTERISTICS OF THIS DATA.